Protein Info for ABZR87_RS21755 in Ralstonia sp. UNC404CL21Col
Annotation: ATP-binding cassette domain-containing protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 61% identical to METN2_PSEPF: Methionine import ATP-binding protein MetN 2 (metN2) from Pseudomonas fluorescens (strain Pf0-1)
KEGG orthology group: K02071, D-methionine transport system ATP-binding protein (inferred from 66% identity to cti:RALTA_B1396)Predicted SEED Role
"Methionine ABC transporter ATP-binding protein" in subsystem Methionine Biosynthesis or Methionine Degradation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (378 amino acids)
>ABZR87_RS21755 ATP-binding cassette domain-containing protein (Ralstonia sp. UNC404CL21Col) MTTLVSNPTHIWTDAIAPHARHADAAISAPTAGTITFCNVGKTYRAAAGDVHALQGIDLD IPAGGIFGIIGRSGAGKSSLLRTINGLEQPTSGQVLVDGVDVGTLGRAALVQLRRRIGMI FQHFNLLSAKTVWENVALPLKVAGVPAAEIAQRVDALLALVGLEGKQHVYPGRLSGGQKQ RVGIARALVHRPEILLCDEATSALDPETTDAILALLRDINRRLGLTIVLITHEMGVIRDI CDNVLVLEAGRIAEQGPVWRVFGDPQHDATRALLEPLRGGLPEDVALRLQPTPPARAPFE QLIELSYTGAAAVPELAQIAQALHQPTRLLRADLDRIQGRTQGRLLVAAAGSTLSADALA ALQLSQHTRSLGYVAAHD