Protein Info for ABZR87_RS21520 in Ralstonia sp. UNC404CL21Col

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details transmembrane" amino acids 103 to 127 (25 residues), see Phobius details amino acids 139 to 161 (23 residues), see Phobius details amino acids 181 to 199 (19 residues), see Phobius details amino acids 243 to 265 (23 residues), see Phobius details amino acids 285 to 311 (27 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 6 to 90 (85 residues), 51.8 bits, see alignment E=8.9e-18 PF00528: BPD_transp_1" amino acids 118 to 316 (199 residues), 103.3 bits, see alignment E=1.4e-33

Best Hits

Swiss-Prot: 31% identical to Y3408_BRUSU: Putative peptide permease protein BRA0408/BS1330_II0405 (BRA0408) from Brucella suis biovar 1 (strain 1330)

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 93% identity to rsl:RPSI07_mp1035)

Predicted SEED Role

"Peptide ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (318 amino acids)

>ABZR87_RS21520 ABC transporter permease (Ralstonia sp. UNC404CL21Col)
MNRVILKLLMRRVALALLSLLAVSVIVFSITAVLPGDAAQEQLGQDATPEALAALRAQMG
LNVPAPQRYAHWLAGIARGDLGQSTTTQMPVAELVASRLPNSLLLAAVTALFSVPIALSL
GVASAVWRGSWFDRVASTASVAVVSVPEFLVATLAVLVFAVKLRWLPALSYVNDIESLGQ
MLQAFAMPVLSLCCVIVAQMMRMSRAAVIDQLEAPYIEMVRLKGASPMRVVLAHALPNAV
GPIANAVALSLSYLLGGVIIIETIFNYPGIAKLMVDGVSQRDMPLVQACAMIFCAGYLLL
VTAADVLGIVANPRLRHR