Protein Info for ABZR87_RS21275 in Ralstonia sp. UNC404CL21Col

Annotation: VOC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 143 PF06983: 3-dmu-9_3-mt" amino acids 3 to 138 (136 residues), 44.3 bits, see alignment E=2.5e-15 PF00903: Glyoxalase" amino acids 7 to 137 (131 residues), 32.3 bits, see alignment E=1.2e-11

Best Hits

Swiss-Prot: 38% identical to YJDN_ECOLI: Protein YjdN (yjdN) from Escherichia coli (strain K12)

KEGG orthology group: K04750, PhnB protein (inferred from 78% identity to rpi:Rpic_4569)

Predicted SEED Role

"PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (143 amino acids)

>ABZR87_RS21275 VOC family protein (Ralstonia sp. UNC404CL21Col)
MQVQPYLFFEGRCEEALEFYKKTLSAKVDVVMHYKDAPKDAQPTAEQCGGMAPPLDKVMH
AAFRVGETQILASDGMAGGKTDFKGFGLSVSVADNAAAERTFKALGDGGHVTMPMSETFF
AHAFGMVTDRFGITWMVIAPKPM