Protein Info for ABZR87_RS21245 in Ralstonia sp. UNC404CL21Col

Annotation: 1,2-phenylacetyl-CoA epoxidase subunit PaaD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 170 PF01883: FeS_assembly_P" amino acids 10 to 70 (61 residues), 47 bits, see alignment E=1.2e-16 TIGR02159: phenylacetate-CoA oxygenase, PaaJ subunit" amino acids 16 to 169 (154 residues), 195.4 bits, see alignment E=2.9e-62

Best Hits

KEGG orthology group: K02612, phenylacetic acid degradation protein (inferred from 81% identity to rpi:Rpic_4564)

MetaCyc: 45% identical to anthraniloyl-[acp] 1,2-epoxidase subunit K (Streptomyces sp. S4(2010))
1.14.13.-

Predicted SEED Role

"Phenylacetate-CoA oxygenase, PaaJ subunit"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (170 amino acids)

>ABZR87_RS21245 1,2-phenylacetyl-CoA epoxidase subunit PaaD (Ralstonia sp. UNC404CL21Col)
MVSERLQRARIALEAVTDPEIPVVTIAELGILRDLQLDDAGTLVATITPTYSGCPAMEQI
SDDVSRALQAADVGAYRVRSVLSPAWTTDWITAEGRRKLRDFGIAPPAHVADDGGARPIR
LTRPAQAEQIACPQCGSHDTALISAFGSTACKALYRCRACREPFDYFKPY