Protein Info for ABZR87_RS21080 in Ralstonia sp. UNC404CL21Col

Annotation: LamG-like jellyroll fold domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 767 transmembrane" amino acids 32 to 44 (13 residues), see Phobius details PF13385: Laminin_G_3" amino acids 596 to 759 (164 residues), 42 bits, see alignment E=5.5e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (767 amino acids)

>ABZR87_RS21080 LamG-like jellyroll fold domain-containing protein (Ralstonia sp. UNC404CL21Col)
MSMKSRADQQPVTLDDLAAVPELKRRQLLRMMLASTAVGLSGALSGCGGGDASDASTGST
STGTGTSPGAGNPGTGTPAPKMVSSFTLAALPDTQFYPRYASAKMGELYQKNYPTINPQF
DNPFKSQTQWIAQNAKALKLAFTTHLGDIVDQSWYYTSEGSAPWSANTDLLSNSQLSNGT
VTKEWELASQAMQVLEKANCNYSICAGNHDIGAIGSSMQWGPDWGVGVSGFDNTDGYQDG
GNHRQGLLEPYLKVFPTARAQQQSTFGGRHGSGFHEYHVFQAEGNQFLVLSMSWRASDDA
IAWANSVIAKNPGIPVILICHQLAGIGSDGVTATDTAYSSYLWDKLIKNNDQIFMAVSGH
YHGACKMTKKNAAGNDVIFMVVDYQMAYMGGNGLMRLFEFDLTNNRIVASSFSPWVPVKP
EASLTPFDSAWLTADNQNFSIDIDFAKRFAGFNPGFKAAAGSVSGSLTDVAKGLILANYH
NPPQVAGKPASGPNDYPVVPNTLAHWRFYNTAAAEGQALSPYQPGFQIKDASVPGDTTAG
ANPISLNTWMGGQPGDLVWSKDHHPLSSAPGSLQFKNANQTRSSYFTTDTTSPLNVQTFA
SGYTIEAFLKIDSAWTAQNNAWMGILYRLGARSAATGVSWPGDVDQGDTMAMFAFSNLME
FQWEVIPTDNTENLACWSGGVSAGQWLHVAIVNDGKGSTTMYVEGAPILRNNSGMDGIRY
VASNQQMAIGCAQYGGSMGNGFFGSLGEMRIVGAPLPPSQWLTARAS