Protein Info for ABZR87_RS21040 in Ralstonia sp. UNC404CL21Col

Annotation: DUF2878 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 176 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 28 to 44 (17 residues), see Phobius details amino acids 56 to 78 (23 residues), see Phobius details amino acids 88 to 108 (21 residues), see Phobius details amino acids 115 to 138 (24 residues), see Phobius details amino acids 145 to 165 (21 residues), see Phobius details PF11086: DUF2878" amino acids 7 to 161 (155 residues), 112.8 bits, see alignment E=8.8e-37

Best Hits

KEGG orthology group: None (inferred from 50% identity to bgl:bglu_2g09140)

Predicted SEED Role

"FIG024285: Hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (176 amino acids)

>ABZR87_RS21040 DUF2878 domain-containing protein (Ralstonia sp. UNC404CL21Col)
MRSHRALLYAVAGQAGWFVCVLSAARDAAWVGIVFVAGLLALHLRQAPQPRWELRLVVWV
VVLAAPWETALIRAGLIAYPHGTLWAGFAPPWLLALWVLFAIQVNVLFRWLRGRWWLAMV
LGAVAGPLSFRAGAALGAAHISEMAATLGTLAIGWAIWMPLLVWMGERSDGTGISP