Protein Info for ABZR87_RS21015 in Ralstonia sp. UNC404CL21Col

Annotation: TIGR01777 family oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 246 to 268 (23 residues), see Phobius details PF01370: Epimerase" amino acids 3 to 216 (214 residues), 96.1 bits, see alignment E=2.3e-31 TIGR01777: TIGR01777 family protein" amino acids 3 to 293 (291 residues), 337.1 bits, see alignment E=5.5e-105 PF08338: DUF1731" amino acids 250 to 294 (45 residues), 72.5 bits, see alignment 1.9e-24

Best Hits

Swiss-Prot: 47% identical to YFCH_ECOLI: Epimerase family protein YfcH (yfcH) from Escherichia coli (strain K12)

KEGG orthology group: K07071, (no description) (inferred from 69% identity to adk:Alide2_2986)

Predicted SEED Role

"Cell division inhibitor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (310 amino acids)

>ABZR87_RS21015 TIGR01777 family oxidoreductase (Ralstonia sp. UNC404CL21Col)
MRILLTGGTGLIGRALCRHWQAQGHDLLVWSRTPERVARLCAGARGIARLRELDGAAPLD
AVVNLAGAPIADRPWSAARRELLWRSRVDLTRELVDWLGRCERPPRVLVSGSATGWYGDR
EQELLDEDSGAGNDDFGSQLCVAWEKEARRAEALGVRVVLLRTAPVFASDGGMLPKLRLP
FSMGLGGRLGSGRQWMPWIHLDDVVGLIDFLLHHADCWGAFNACAPDIVSNADFARTLAA
TLRRPMFLSVPAWVLRMALGEMSVLLLGSQRLQPRRALEAGYRFRFPNLEEALAGLVVQD
QHPAARQPAD