Protein Info for ABZR87_RS20975 in Ralstonia sp. UNC404CL21Col

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 transmembrane" amino acids 53 to 77 (25 residues), see Phobius details amino acids 83 to 104 (22 residues), see Phobius details amino acids 116 to 136 (21 residues), see Phobius details amino acids 142 to 159 (18 residues), see Phobius details amino acids 172 to 194 (23 residues), see Phobius details amino acids 201 to 220 (20 residues), see Phobius details amino acids 292 to 309 (18 residues), see Phobius details amino acids 329 to 350 (22 residues), see Phobius details amino acids 358 to 378 (21 residues), see Phobius details amino acids 384 to 405 (22 residues), see Phobius details amino acids 417 to 438 (22 residues), see Phobius details amino acids 443 to 465 (23 residues), see Phobius details PF07690: MFS_1" amino acids 54 to 432 (379 residues), 160.5 bits, see alignment E=8e-51 amino acids 331 to 471 (141 residues), 37.4 bits, see alignment E=2.2e-13 PF06779: MFS_4" amino acids 64 to 170 (107 residues), 29.5 bits, see alignment E=7.9e-11 PF00083: Sugar_tr" amino acids 83 to 479 (397 residues), 185 bits, see alignment E=3.8e-58

Best Hits

KEGG orthology group: None (inferred from 80% identity to bch:Bcen2424_3228)

Predicted SEED Role

"Transporter, MFS superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (480 amino acids)

>ABZR87_RS20975 MFS transporter (Ralstonia sp. UNC404CL21Col)
MTITTPALAHHGVQETAHTASADSGSRAAQLLFRIENVPFSRWHTKARIIMGSATLFDAF
DALSLAFVMPVLVGLWHLSPGEIGVLIAAGYLGQVVGALLFGWLAERLGRVRSATITVGL
MSVMSVVCAFAGNFQMLFLCRFLQGIGVGGEVPVAATYINELSQAHGRGRFFILYELIFP
LGLLAAAQVGAFLVPRFGWEYMFLVGGIPGILVALLIMRLPESPRWLISKGRFDEAEHVI
RDIEASTPRRNLDPQRDSTEIDTRVATLLDGIRARRKGSWKELFSPLYRGRTLVVWLLWA
SSYFVANGINNWLPSLYKTVYHLPLQESLHMASVSNVLSACAVLVCALLVDRVGRRRWAM
ACFLISGALLAALAAVGAGSALSVMILASSAYAVMGTTTVLLYLYTPEIYPTRMRAIGTG
LATSWLRAASAAAPAIVGVVLAGYGIASVFVMFALVNVIGLLAAMRMIETTNRALEDISP