Protein Info for ABZR87_RS20605 in Ralstonia sp. UNC404CL21Col

Annotation: DUF4337 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 transmembrane" amino acids 143 to 163 (21 residues), see Phobius details amino acids 170 to 188 (19 residues), see Phobius details PF14235: DUF4337" amino acids 30 to 186 (157 residues), 127.3 bits, see alignment E=3.3e-41

Best Hits

KEGG orthology group: None (inferred from 97% identity to rpf:Rpic12D_4625)

Predicted SEED Role

"FIG00978095: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (190 amino acids)

>ABZR87_RS20605 DUF4337 domain-containing protein (Ralstonia sp. UNC404CL21Col)
MSEGFHVHGAHDHALEHAAESGHADSFAGRIAVMTAILSTAGAIFGYQGGATQNAALLAK
NEAAIHKTEAANRWAYYQAKGQKQAIAELTAQLPGTDQAAAKRDAQRYAAEKEDIRRQAE
DQERLAKEADEASELAVHHHHRWAQAVAAIQVSIALAAITLLSRRRWMQVLSYGVGAVGG
VVAVLALLHI