Protein Info for ABZR87_RS20360 in Ralstonia sp. UNC404CL21Col

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR01728: ABC transporter, substrate-binding protein, aliphatic sulfonates family" amino acids 45 to 309 (265 residues), 218.3 bits, see alignment E=6.3e-69 PF13379: NMT1_2" amino acids 56 to 252 (197 residues), 49.9 bits, see alignment E=7.8e-17 PF12974: Phosphonate-bd" amino acids 67 to 186 (120 residues), 37.1 bits, see alignment E=5.1e-13 PF09084: NMT1" amino acids 68 to 241 (174 residues), 47.9 bits, see alignment E=3.2e-16 PF00497: SBP_bac_3" amino acids 104 to 230 (127 residues), 27.3 bits, see alignment E=5e-10

Best Hits

KEGG orthology group: K02051, sulfonate/nitrate/taurine transport system substrate-binding protein (inferred from 99% identity to rpf:Rpic12D_4589)

Predicted SEED Role

"ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components" in subsystem Alkanesulfonate assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (313 amino acids)

>ABZR87_RS20360 ABC transporter substrate-binding protein (Ralstonia sp. UNC404CL21Col)
MPQHRRRFLQSTLALAAAPALSIAQPRLVLKAGDQKGGLRALLEAADSLKGVQYDIQWTE
FPAAAPLAEALNAGAVDLGPIGDAPAIFALAAGTRIKLIGANRSDPYGTAVLVRPDSPLK
TAADLKGKSIGTNRGSIGHFVALKALESAGLGPDDANFRFLPPADAKLALVNGSIDAWST
WEPYTAMAETAKHARVLVSGRGLWSGLSYLAATDAALAAKRDALRDFLQRVVRAQVWSYQ
HVDSFSATLARIIGIAPEAARLQFARRQTVWRAIDPQVIAEQQRTADFYVKVGLLKQRLE
VATTFDTGFPLIA