Protein Info for ABZR87_RS20220 in Ralstonia sp. UNC404CL21Col

Annotation: type VI secretion system baseplate subunit TssF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 616 PF05947: T6SS_TssF" amino acids 2 to 612 (611 residues), 646.2 bits, see alignment E=2.8e-198 TIGR03359: type VI secretion protein, TIGR03359 family" amino acids 4 to 615 (612 residues), 731.2 bits, see alignment E=6.4e-224

Best Hits

KEGG orthology group: K11896, type VI secretion system protein ImpG (inferred from 92% identity to rsl:RPSI07_mp0660)

Predicted SEED Role

"Protein ImpG/VasA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (616 amino acids)

>ABZR87_RS20220 type VI secretion system baseplate subunit TssF (Ralstonia sp. UNC404CL21Col)
MEELLPYYERELAFLRRYSRDFAERYPKIAGRLAMSGDGCDDPHVERMIESFAFLTARVS
KKLDDDYPEFTEALLEVLYPHYLRPFPSCSVAHFDVRGVAAQLSAPVTIARGTFLTTRMV
RKVECRFRTAYDVTFAPVRVAGATFERAVSAPAAVQLPKGATGAIAITLEYVGERGGFES
LSMDKLRVYMDGEPSFVAALGDALFLHTAAGYVEAERAGVWKRLISVPLHEVGFSEDESL
IDCPARSHPAYRLLTEHFSFAEKFNFFDIDLAALRRGLTPGVPVRRLTLHLVLKDVRSDS
HAARLLENLQPEHLRLHCTPVVNLFQQKADPIRIEHTASAYPVVADSRRAHGFDIYSIDN
VQLVRETTAHEKVTEFRPFYSLHHGEEPGRAGHYWLARRNELIAQRSPGFETEISIVDTQ
FDPASPQTDTLSLTVTCTNRDLPSTLAFGQPDGDLSMEGSSIARNITFLRKPTPSMRFGG
GRAAQWRLISLLALNHLSLVQNGLPTLKEMLRLHDLPRNAISARQIEGIVALDYQPATQW
LAGKPFATFVRGLEVRLTLDEDAFVGTGMHRFIRVLDHFFGLYVHMNSFVQLIAVSRRTG
KELVKCAPRSGESILV