Protein Info for ABZR87_RS20215 in Ralstonia sp. UNC404CL21Col

Annotation: type VI secretion system baseplate subunit TssG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 PF06996: T6SS_TssG" amino acids 19 to 343 (325 residues), 313.1 bits, see alignment E=1e-97 TIGR03347: type VI secretion protein, VC_A0111 family" amino acids 19 to 344 (326 residues), 338 bits, see alignment E=2.3e-105

Best Hits

KEGG orthology group: K11895, type VI secretion system protein ImpH (inferred from 85% identity to rsl:RPSI07_mp0661)

Predicted SEED Role

"Uncharacterized protein ImpH/VasB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (363 amino acids)

>ABZR87_RS20215 type VI secretion system baseplate subunit TssG (Ralstonia sp. UNC404CL21Col)
MRTPQRRIDPGVIRRLLQQPHRYQFFQAVRLLEQVFAREGGTAPEQALATRLSFRNTLSL
SFPPSELQHIEAEGITAEMLETDAAFIAALEEGALDSLAITPTFFGMLGGQGALPLRYTE
IVAERESLWRDRAARAFFDIFSNRATALFYLAWKKYRLPFQYEVDSNKHYLPLLLSLAGA
ADKTLRRDLSTTPGPILDEALAGYATAIRHRPVSAAYLQRVLSDYFQAPMRVEQFVGGWY
RVPASQYTRLGSTNNVLGATALAGARVWQRDLRVRLWVGPLKRAQYRNFLPGASGALALR
KMLTILCGTTLEFEIKLILRQQDVTGSTLDNSNDGRLGWDTFLCSRPAQQDRSDAQYTLA
PLH