Protein Info for ABZR87_RS20195 in Ralstonia sp. UNC404CL21Col

Annotation: T6SS effector BTH_I2691 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 878 transmembrane" amino acids 750 to 769 (20 residues), see Phobius details amino acids 780 to 806 (27 residues), see Phobius details amino acids 812 to 836 (25 residues), see Phobius details PF20249: VasX_N" amino acids 11 to 175 (165 residues), 91.3 bits, see alignment E=3.5e-30

Best Hits

Predicted SEED Role

"FIG00975919: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (878 amino acids)

>ABZR87_RS20195 T6SS effector BTH_I2691 family protein (Ralstonia sp. UNC404CL21Col)
MAAEKVCATPCSNCDRKGLPILFTRYAVAYSAQKANMALLKQLSPAGQLQAKPAGVAIGT
AVYNVRLLRAGYLYVYVDRGPLICTDDEWKGYVVHPQGYLTEFDVFVPGKTAPKIACARD
SRQANNSMVWIRDAKRVKKLWYLFSPDPIDYEHFKNVISANPAAYMKSFDVAGWANGNTS
QPDTTQPGLLNGQVAEFAALANPKLIDALDPLLYGLMGSTPQERGWGDYQEEVSTPKMTL
DGYASGFDETTTVMRTGPTYEKAHAARLKQMAAFLQQNHGAVVACDDAMGITQELGHLQG
EAQTVYTAWQARSSPGFDSSVSNEWVYQTAIGAQGLRDLVKKGAIQKASEHIDNWNKMRR
PAGVFYADKATRAREEAIREAAIARNQQAERDRAAAAGDAEFKELFDSTSAATIIAAQGS
EYNNVQALRENLGRDQVAWLDSASLKQAIALYSPKDTAVNQPGGGAALSLELAHCMSGTE
SNKAGKAWLAKVDLWDDNVLGKTLSFNNVPYRQQMKGLTQESPPAQALPNAEPTTSLADA
ITDKLKPFAARVSLGDKALGFMEAFPNISESAALRKFAWPLHIASLMSVKMMKTVQGLPV
PQVEAKLTRYLVSLGLTTLGRTAAQYAGTLSQANRDRLRNAERGLSNAANRADAFKAAPN
ARAAALAGLLDVSFAIIKGTQFQTKMDVRTGTELVGNILQGIGSLADWRAKAYEETVFKG
IEGRNLFATPGMQATFDELQALQLKGLRLTAFKFLLPAALISAFFDGIDAWTSGQRGNYA
VMAAQIASVAGTVFTVVSTGVAVFAIGNASLLAVAAVLGLIGAVLTVVAVIAVLLLKEDD
WITWLRDNPLSLKRKGKKPIHNNLGDTLQKLANAQSGI