Protein Info for ABZR87_RS20190 in Ralstonia sp. UNC404CL21Col

Annotation: DUF6708 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 transmembrane" amino acids 75 to 97 (23 residues), see Phobius details amino acids 117 to 142 (26 residues), see Phobius details PF20455: DUF6708" amino acids 135 to 260 (126 residues), 34 bits, see alignment E=1.2e-12

Best Hits

KEGG orthology group: None (inferred from 72% identity to rsl:RPSI07_mp0673)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (375 amino acids)

>ABZR87_RS20190 DUF6708 domain-containing protein (Ralstonia sp. UNC404CL21Col)
MFVRENAYARKKSRSSEQGRKYLNVDGQRQWRVDEPSEAEGVSLPGRCIFAQNDAYLEIC
NPGWDLQWRAGIGNFFVVIPALLMIWWWFGFAIYPLISDGVIFFFVKTSLGDGDKVLLWM
GWLLFFPLAIGCGFLLYLWFFVGGMRTAFFTLARGRIRFNRLKRKIYVLRPRYCGGNVVV
DWDKVVALLKPEGVRRGDKETVQAIALYRPPSHGGGSDSDEDAIFVGPTLPFRDLQAAGM
WEYIRRYMEEGPTVDQIPPNAPSNYKQIPRYLPQEYTTYCGKPSWRQYILEQKPGFMEAS
CHMMSQMTCAWPRFPKEWGSDSGLGEPEDHPVQTGAVMTAMVYRAQGRLSAEDNLEFLRR
WGTQDALNEALSKAV