Protein Info for ABZR87_RS19275 in Ralstonia sp. UNC404CL21Col

Annotation: type III secretion system export apparatus subunit SctS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 91 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 48 to 68 (21 residues), see Phobius details PF01313: Bac_export_3" amino acids 5 to 76 (72 residues), 68.6 bits, see alignment E=1.7e-23 TIGR01403: type III secretion protein, HrpO family" amino acids 5 to 83 (79 residues), 81.4 bits, see alignment E=1.9e-27

Best Hits

Swiss-Prot: 44% identical to YSCS_YERPE: Yop proteins translocation protein S (yscS) from Yersinia pestis

KEGG orthology group: K03227, type III secretion protein SctS (inferred from 60% identity to bmu:Bmul_3740)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (91 amino acids)

>ABZR87_RS19275 type III secretion system export apparatus subunit SctS (Ralstonia sp. UNC404CL21Col)
MSATILEATRQGLLLVLLVSLPVVAVATVSALLIAIAQAVTQIQDQSIGLSVRLIAVMVT
IVVLAGWGGREVLRFARMALDQVFYGGVAPF