Protein Info for ABZR87_RS19110 in Ralstonia sp. UNC404CL21Col

Annotation: MurR/RpiR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 transmembrane" amino acids 121 to 142 (22 residues), see Phobius details amino acids 207 to 227 (21 residues), see Phobius details amino acids 241 to 259 (19 residues), see Phobius details PF01418: HTH_6" amino acids 5 to 79 (75 residues), 59.8 bits, see alignment E=3.1e-20 PF01380: SIS" amino acids 127 to 254 (128 residues), 70.3 bits, see alignment E=2.2e-23

Best Hits

KEGG orthology group: None (inferred from 99% identity to rpi:Rpic_4196)

Predicted SEED Role

"Transcriptional regulator, RpiR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (289 amino acids)

>ABZR87_RS19110 MurR/RpiR family transcriptional regulator (Ralstonia sp. UNC404CL21Col)
MREPMDIVTRLSQRAAELRPAEQKVAQTVLSDIAEAAAGSIQTLAERAGVSEASVTRFAK
AMGCRDVRELKLKLAQAAAVGQRFLDGGADRPPSSADGILADISNVLEANRALVQPEAFR
TAAVALVAARMIAVFGMGGGSTTMADEMRYRLARLGRPVTTYHDSMLQRMVAATLSPDDV
VVVFSVTGHVPEVIDSVTIAREYGARIVAITAMGSPLATLADVLLPIQAMETDFIFKPSS
SRYAMMMMIDLLATEVALQQSDRSKELLRRIKYVLDAHRGGGNRQPLGD