Protein Info for ABZR87_RS19020 in Ralstonia sp. UNC404CL21Col

Annotation: multidrug efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1033 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 337 to 353 (17 residues), see Phobius details amino acids 360 to 384 (25 residues), see Phobius details amino acids 390 to 410 (21 residues), see Phobius details amino acids 431 to 453 (23 residues), see Phobius details amino acids 463 to 482 (20 residues), see Phobius details amino acids 527 to 548 (22 residues), see Phobius details amino acids 854 to 872 (19 residues), see Phobius details amino acids 879 to 898 (20 residues), see Phobius details amino acids 904 to 924 (21 residues), see Phobius details amino acids 950 to 971 (22 residues), see Phobius details amino acids 983 to 1009 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1009 (1006 residues), 1133.6 bits, see alignment E=0 PF03176: MMPL" amino acids 294 to 487 (194 residues), 30.6 bits, see alignment E=2.6e-11 PF02355: SecD_SecF" amino acids 338 to 480 (143 residues), 21.5 bits, see alignment E=2e-08

Best Hits

KEGG orthology group: None (inferred from 62% identity to aba:Acid345_2831)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1033 amino acids)

>ABZR87_RS19020 multidrug efflux RND transporter permease subunit (Ralstonia sp. UNC404CL21Col)
MNLSATFIARPVATALLTIGVALAGIAAFRLLPVSPLPQVDFPTISVSASLPGASPETMA
ATVATPLERSLGRIAGITEMTSSSSLGSSRITLQFDLSRDIDGAARDVQAAINASRSLLP
SGLPSNPTYRKVNPADAPIMIVGLTSDTKSRGELYDAASTILAQKLSQINGVGQVTIGGA
SLPAVRVELNPMALNKYGISMETVRTVITSTNANKPKGMMESGDRVWTIYANDQAKKAVE
YQSLIIAWRNGSPVRLADVAEVTDSVQDIRNYGSANGKPSVLLIISRQPGANIIDTVDRI
NDILPYLRNTIPAQINLDVMMDRTPTIRASLKDVERTLVLSIALVIMVVFLFLRNVRATL
IPSVAVPVSLIGTFGVMYLCGYSLDNLSLMALTVATGFVVDDAIVVLENVSRHIENGMRP
MQAALKGAREVGFTVVSMSFSLIAVFIPLLMMGGIVGRLFREFAVTLSVAILVSLVVSLT
TTPMMCARLLKPAAEEQHGWFHRKTEGFFTLLLDLYRNSLAWALRHSWLTLLILLATVCL
NVYLYIIVPKGFFPQQDTGRVIGFIQADQSISFQAMRTKLTDFITIVRQDPAVENVVGFT
GGSQRNTGQMFIQLKPLAERKMSADQIINRLRGKLAREPGASLFLQSVQDIRVGGRASNA
QYQYTLQADDLNELRAWDPKIKQALTQVKSLTDVNTDTQDKGLQTSLVIDRDKAKSLGIN
PSDIDNALNNAFGQRQVSTIYNPLNQYRVVMEAAPQYWQNPDGLRDIYIITSTGAQVPLS
TFSHYEPTNTALAVNHQGQFAASTISFNLAPGASLSGATQDIQDAMNRIGVPSSVHGSFQ
GTAKAFQDSLSSQPVLILFALITIYIVLGVLYESYVHPITILSTLPSAGVGALLALIITD
TDFSIIALIGVILLIGIVKKNAIMMIDFALEAERSQGMSPADAIFHACVLRFRPILMTTM
AALLGALPLALGHGDGAELRTPLGISIVGGLLVSQILTLYTTPVVYLALDRLRLRRAGRS
KDAPLPALDSQGS