Protein Info for ABZR87_RS18945 in Ralstonia sp. UNC404CL21Col

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 61 to 83 (23 residues), see Phobius details amino acids 91 to 112 (22 residues), see Phobius details amino acids 118 to 140 (23 residues), see Phobius details amino acids 149 to 172 (24 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 233 to 255 (23 residues), see Phobius details amino acids 274 to 295 (22 residues), see Phobius details amino acids 304 to 326 (23 residues), see Phobius details amino acids 332 to 354 (23 residues), see Phobius details amino acids 366 to 385 (20 residues), see Phobius details amino acids 394 to 416 (23 residues), see Phobius details PF07690: MFS_1" amino acids 30 to 377 (348 residues), 153.5 bits, see alignment E=1.5e-48 PF00083: Sugar_tr" amino acids 55 to 200 (146 residues), 51.7 bits, see alignment E=1.4e-17

Best Hits

KEGG orthology group: None (inferred from 72% identity to rme:Rmet_0776)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (445 amino acids)

>ABZR87_RS18945 MFS transporter (Ralstonia sp. UNC404CL21Col)
MNLHAADPRADHDDYLVSRPQAWFAFAMTFALMLFDYIDRQVIVSLFPHLKTAWALSDKQ
LGALVSVISIVVAVGGLPVALLADRFSRVKSIVVMATVWSLATISCMFTRNYAQLFTARA
IVGVGETGYGSVGAALIASLFPKRLRATLMGAFFAAASVGSVLGVLLGGVIAARWGWQAA
FGVVGVPGLVLALLYVFVPDYKTVAIAPGNGHVRQPAGTLLQRVAGALTSSRTLWWTCLG
AAFQLIVVSTIWSWLPSYLNRYHGTPPDRAAMQAALVVLCGALGAFVWGVVADVVAARRQ
RNRLIAVAVLAVVTLLVFMTAFGTAMPANQQFLMIAFGGFLMTCTVAPASSVVFDVVHPG
VRSTGAAVLSLFQNLFGLAIGPFVGGAMSDAWGLQTALAVMPVFGVVAAACFLLAARSYE
AELKRVANVSIDAAPSAAPAAVASA