Protein Info for ABZR87_RS18795 in Ralstonia sp. UNC404CL21Col

Annotation: MDR family MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 530 transmembrane" amino acids 43 to 69 (27 residues), see Phobius details amino acids 75 to 96 (22 residues), see Phobius details amino acids 108 to 131 (24 residues), see Phobius details amino acids 133 to 133 (1 residues), see Phobius details amino acids 138 to 157 (20 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 195 to 212 (18 residues), see Phobius details amino acids 232 to 250 (19 residues), see Phobius details amino acids 262 to 278 (17 residues), see Phobius details amino acids 297 to 318 (22 residues), see Phobius details amino acids 333 to 352 (20 residues), see Phobius details amino acids 364 to 382 (19 residues), see Phobius details amino acids 388 to 411 (24 residues), see Phobius details amino acids 426 to 451 (26 residues), see Phobius details amino acids 493 to 512 (20 residues), see Phobius details PF07690: MFS_1" amino acids 47 to 439 (393 residues), 186.7 bits, see alignment E=9.1e-59 PF06609: TRI12" amino acids 55 to 304 (250 residues), 25.9 bits, see alignment E=5.1e-10 PF00083: Sugar_tr" amino acids 77 to 211 (135 residues), 59.2 bits, see alignment E=5.4e-20

Best Hits

KEGG orthology group: None (inferred from 96% identity to rpi:Rpic_4154)

Predicted SEED Role

"FIG00975300: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (530 amino acids)

>ABZR87_RS18795 MDR family MFS transporter (Ralstonia sp. UNC404CL21Col)
MSSRPSIEPPKPDTPTAPIASAPSAASSPLDALPVADIPVMAVMGGLMLAILLGALEQTI
VAVALPVIAGEFNGFALMAWLVSAYLVASTVVTPIYGKLSDLYGRRAMLTTAIVLFVLAS
VACALATSMPMLLVARVLQGLGGGGLISVSQATIADVVPLRERGRYQGYVSGMWAMASLA
GPVIGGYLTHYLSWRWIFWINLPLGIVALLVVRRTLRHLPVAHQRRPIDVPGVLLFAAGL
TALLLMITRVGQGTPLTQPDNLGLLAGAVVLLGAFVWQENRAVEPIIPLSMFRVRTVTIC
CLALFLCFFQLIATSVLMPLRFQMVAGASPDAAALRLVPLTLSIPLGAFIAGRWMTHSGR
YKPLMLIGASVVPFAVASLGLLDPHSVLALTLAMIVLGLAIGVQFPTGLVATQNAVPPQT
VGLATALTAFSRLLGGAVGVAVLTSVLIALLRQAAPGAQVAAGGDVLMDLFHAALASNGA
DAQALQRAGESAFRHLFFFAAAVSVISPLLIVRLEEKALRGKVSLAEAIE