Protein Info for ABZR87_RS18725 in Ralstonia sp. UNC404CL21Col

Annotation: sialidase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 94% identity to rpi:Rpic_4137)

Predicted SEED Role

"Operon 2450 Gene 2 signal peptide protein Nitrosomon as europaea ATCC 19718 gi"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (417 amino acids)

>ABZR87_RS18725 sialidase family protein (Ralstonia sp. UNC404CL21Col)
MQSIPRFLAGALLALAATVAAAHEGHDHGAMAGKPAAKPQLATTAAFDKAGRLWVTWAEG
QHVVIASSDDLGKTLSAPQRVNPQPEPIYTDGENRPKVIASPDGALYVSWSRPLDAPYTG
FVRFSRSLDGGKTWSAPVTVHHDRQPITHRFDSIAVDSAGRIFVTWIDKRDLLRAQAAKQ
PYDGAAVYYTVSTDRGATFAPERKIIDQTCECCRIALAPDADGHMLALWRNVFAGQIRDH
ALATLPIGNAPLAVTRATFSEWRVDACPHHGPALAVTADGVRHMAWFSVQQDKPGLFYSR
LSADGKPIGEAWGFAGSPQAGAQASHPALLAADGALWLVWKQFADDRMQILLRKSTDGGA
HWTAPASAASTNGGSDHPQLLARDGHVYLSWRTQAEGYRLIDIGNVSPSNPSLEASK