Protein Info for ABZR87_RS18590 in Ralstonia sp. UNC404CL21Col

Annotation: NAD(P)/FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF00890: FAD_binding_2" amino acids 65 to 113 (49 residues), 21.2 bits, see alignment 2.3e-08 PF13450: NAD_binding_8" amino acids 67 to 135 (69 residues), 35.6 bits, see alignment E=1.4e-12 PF01593: Amino_oxidase" amino acids 72 to 538 (467 residues), 22.4 bits, see alignment E=1.1e-08

Best Hits

KEGG orthology group: None (inferred from 97% identity to rpi:Rpic_4119)

Predicted SEED Role

"FIG00456554: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (540 amino acids)

>ABZR87_RS18590 NAD(P)/FAD-dependent oxidoreductase (Ralstonia sp. UNC404CL21Col)
MATRRSFLVGAAAAGVAAAGAASWAGFRAFTEITPNVRMPGQAAGHRLRDLRALPTPSET
RRVGVAICGSGIGGLSCAWRLAKSGRRDAVVVEGPERYGNAAGGAFGTQRFPTGAHYLPL
PSMESTHVREMLADFGVIERDPFALRPTYDERVLVHAPDERLWLGNRWQDGFVPHEGITE
AERAEHTRFFAHIDRLRQTTGADGRRVFAVPTALSSADPAWRALDALTFRDWLHREGYRA
ATLHWYADYCCRDDYGVTADHVSAWAGIAYFASRGGMASNAEQGTVLTWPEGLDWMAERL
FEAAGLNKPGRLLPGSAARIGTTTEAGARVFADVLQADGRVVRLLADHVVSAMPLHVAKH
IVDGFDVPDAELPETAPWLLANLLIDGFPPEHDDTPLAWDNVVYRGTGLGYVVANHQDIR
VGPPAQSVFTAYVALSDMTPKAAREWLLKASPQTLLDRALADLDTVYGIRLRTQIRRADL
TLRGHAMAIPTPGFLSRPGIARLRESAGPIHYAHADLSGYSVFEEAAWWGDRAARRILGG