Protein Info for ABZR87_RS18485 in Ralstonia sp. UNC404CL21Col

Annotation: GGDEF domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 37 to 57 (21 residues), see Phobius details amino acids 63 to 87 (25 residues), see Phobius details amino acids 94 to 112 (19 residues), see Phobius details amino acids 118 to 139 (22 residues), see Phobius details amino acids 151 to 174 (24 residues), see Phobius details amino acids 186 to 206 (21 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 220 to 381 (162 residues), 110.6 bits, see alignment E=3.3e-36 PF00990: GGDEF" amino acids 222 to 377 (156 residues), 108.4 bits, see alignment E=1.6e-35

Best Hits

KEGG orthology group: None (inferred from 66% identity to axy:AXYL_03814)

Predicted SEED Role

"FOG: GGDEF domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (393 amino acids)

>ABZR87_RS18485 GGDEF domain-containing protein (Ralstonia sp. UNC404CL21Col)
MYVDLLTLYLLAVGILLASAGMLFWEHRTNPRRSKALRLLAAGFTTLAFGCTAVLFRHAL
PGATGAALCNLIMLCGYLLVLSGVAALSGRQHRGAAAGVLIGMALVWVVWGAQWQDVLWN
HVSAIPIALVSAMTAREMWRCDAMKPLRPRQLVVAVTTLHAVLYLARALALPWLVSAYGP
AMQAAASKLTMIEGVLYAMVLPMTLLKLIRDEAHGQLLTESQTDYLTRLGNRRWFFEQGA
RLIEGMGSRPVATLVFDLDRFKAINDRYGHQAGDTVLKVFAEIAQHVLGPDVMLARIGGE
EFAALLSGDDACHARARGEAVARCFAEAVQRRSDGAGILATVSIGMAQFDAAMPSLADAL
AAADKALYRAKSLGGNRLEVAQAAGQVDEAVLS