Protein Info for ABZR87_RS18295 in Ralstonia sp. UNC404CL21Col

Annotation: YggT family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 68 to 129 (62 residues), see Phobius details amino acids 160 to 182 (23 residues), see Phobius details PF02325: YGGT" amino acids 12 to 79 (68 residues), 55.6 bits, see alignment E=2.9e-19 amino acids 108 to 173 (66 residues), 62 bits, see alignment E=2.8e-21

Best Hits

Swiss-Prot: 39% identical to YGGT_ECOL6: Uncharacterized protein YggT (yggT) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K02221, YggT family protein (inferred from 98% identity to rpi:Rpic_4087)

Predicted SEED Role

"Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock)" in subsystem Phosphate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (186 amino acids)

>ABZR87_RS18295 YggT family protein (Ralstonia sp. UNC404CL21Col)
MFGDITRFLLDTIFSLFGAALLLRAWTQAVRLSPRNPLSQAIFQLTGWLVHPLRRVIPAT
GYIDWSSLVAAYLTALVYLFLLLASVGLSPIALVPMGFVAALFTVLKWAFNVLVWVTIAS
AVLSWMGPASPMGAVLNTLVDPLLRPIRRVVPPLGGRLDLSPLILLVIAQVIVIALSHLS
LSPLFM