Protein Info for ABZR87_RS18125 in Ralstonia sp. UNC404CL21Col

Annotation: flagellar biosynthetic protein FliQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 92 transmembrane" amino acids 13 to 39 (27 residues), see Phobius details amino acids 49 to 69 (21 residues), see Phobius details PF01313: Bac_export_3" amino acids 6 to 77 (72 residues), 69.4 bits, see alignment E=1e-23

Best Hits

Swiss-Prot: 46% identical to YSCS_YERPE: Yop proteins translocation protein S (yscS) from Yersinia pestis

KEGG orthology group: K03227, type III secretion protein SctS (inferred from 51% identity to bac:BamMC406_4752)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (92 amino acids)

>ABZR87_RS18125 flagellar biosynthetic protein FliQ (Ralstonia sp. UNC404CL21Col)
MNAATVIEITRHALTLVLVLSLPVILVAGISALLIAVLQAVTQIQDQSIGLTVRMIAVMV
TVLLMAGWAGQELLRYAGGALELVLTGRPGLL