Protein Info for ABZR87_RS18030 in Ralstonia sp. UNC404CL21Col

Annotation: flagellar biosynthesis protein FlhF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 635 TIGR03499: flagellar biosynthesis protein FlhF" amino acids 1 to 491 (491 residues), 242.6 bits, see alignment E=4.2e-76 PF00448: SRP54" amino acids 405 to 592 (188 residues), 117 bits, see alignment E=8.9e-38

Best Hits

KEGG orthology group: K02404, flagellar biosynthesis protein FlhF (inferred from 95% identity to rpf:Rpic12D_4180)

Predicted SEED Role

"Flagellar biosynthesis protein FlhF" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (635 amino acids)

>ABZR87_RS18030 flagellar biosynthesis protein FlhF (Ralstonia sp. UNC404CL21Col)
MKMHRFTGLTSRDVLRKVRDQLGDGALILSNRAIPGGIEIIAASDSHVDALVDTQSSAPK
AAQRRPMAPAPIPEPAPIAAATAAVAAAQAPAEEAPQAETPAPNALARLRNRFIASRRAP
AQEDAPAAPVAPVTQAAKPAGRTLQTRVDDDVAFGEEDALAASTRMLAGLSLDRANAEVA
QSAERAMASTAQFIARRTTVEDDEPEMESTARFAARREQAREQDDRPVTLRSFAERVEAQ
ARTLRAEQRKAEAPVKARIDAQADAGKSSDIFVRVEDTMAQPEAPRDDVSLQRSAIQADV
KESIRAETDVMTRRMVGEIETLKSTLNDAMSSLASLGVKLGDPVRTRLFQTMLNAGFSAQ
LTRYVLENMPQHDTYEGALDFVQRAIEKNLSTVSDENSLLDQGGVFALMGPTGVGKTTTT
AKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILGVSVHAVKDAQDLSLALNDLR
EKHVVLIDTIGMSQRDRAVSEQMAMLHAVGPSIKRLLLLNAASNGKTLDEVVGAYRDANL
AGCILTKIDEAASVGHAMDVMIRRRLPLHYVSYGQRVPEDIAVPNKKLLIHRSFRAGAEQ
SSFTLDSDESLLVAQGAVLRNAGNREPGLAAFDFA