Protein Info for ABZR87_RS18025 in Ralstonia sp. UNC404CL21Col

Annotation: flagellar biosynthesis protein FlhA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 711 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 44 to 63 (20 residues), see Phobius details amino acids 73 to 94 (22 residues), see Phobius details amino acids 115 to 138 (24 residues), see Phobius details amino acids 208 to 229 (22 residues), see Phobius details amino acids 249 to 270 (22 residues), see Phobius details amino acids 283 to 302 (20 residues), see Phobius details amino acids 308 to 325 (18 residues), see Phobius details TIGR01398: flagellar biosynthesis protein FlhA" amino acids 20 to 706 (687 residues), 860.5 bits, see alignment E=4.3e-263 PF00771: FHIPEP" amino acids 29 to 698 (670 residues), 887.3 bits, see alignment E=3.7e-271

Best Hits

KEGG orthology group: K02400, flagellar biosynthesis protein FlhA (inferred from 98% identity to rpi:Rpic_4067)

Predicted SEED Role

"Flagellar biosynthesis protein FlhA" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (711 amino acids)

>ABZR87_RS18025 flagellar biosynthesis protein FlhA (Ralstonia sp. UNC404CL21Col)
MNAALLRVTDILRKGDYRSAAGPVLIILILAMMVLPLPPFILDLLFTFNIALSIIVLLIS
MHTLKPLDFSSFPSILLITTLMRLSLNVASTRVVLMEGHTGPDAAGKVIEAFGHFLVGGN
YTVGIVLFVILVIINFMVISKGAGRIAEVSARFTLDAMPGKQMAIDADLNAGLIREDEAR
KRRTAIAQEAEFFGSMDGASKFVRGDSVAGIAILLINIVGGLAVGVLQHGMDVGHAATNY
TLLTIGDGLVAQIPALVISTAAGIMVSRVSTDKDVGQQLSSELFAMPMVLMTTAGVLGLL
GLVPGMPHIPFVLFGGGLGYLGWYLKKKREVPEVEPVLQAIAPVDTPEASWDDVSWVDVL
GLEIGYRLIPLVDKSQDGELLRRIKGIRKKFTQDMGFLAPVVHIRDNLELGPSSYRITLK
GVEIGHGEVQQGKFLAINPGGQDGLGGHGGMGGLGGMGGRLGTQLPGTPTVDPTFGLPAM
WITADVRDRAQAEGYTVVDCSTVIATHVNQLIYTHSTELLGRLEVQQLLDHLGKEAPKLV
EDVVPKLLPVATVQKVLQNLLDEGLHIRDIRTIVETLAEHGGRTQDPAELTAAVRVALGR
AIAQQLFPNKTEMQVVTLDPNLENILLQSVVGSNAGPIEPQLADSLMQAAADSSRQHEQM
GQTGVLLVPPALRPMLARLFKRAAPSLRVLSHAEIPDHRTIKVVAMLGGRA