Protein Info for ABZR87_RS17745 in Ralstonia sp. UNC404CL21Col

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 72 to 93 (22 residues), see Phobius details amino acids 105 to 124 (20 residues), see Phobius details amino acids 130 to 149 (20 residues), see Phobius details amino acids 189 to 212 (24 residues), see Phobius details amino acids 226 to 247 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 82 to 252 (171 residues), 100.2 bits, see alignment E=6.3e-33

Best Hits

Swiss-Prot: 37% identical to TAUC_ECOLI: Taurine transport system permease protein TauC (tauC) from Escherichia coli (strain K12)

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 92% identity to rsl:RPSI07_mp0865)

MetaCyc: 37% identical to taurine ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-64-RXN [EC: 7.6.2.7]

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (262 amino acids)

>ABZR87_RS17745 ABC transporter permease (Ralstonia sp. UNC404CL21Col)
MSTRKLTVRLGDHAWGLAGIVGFLLLWELVPRLGIVSDAYLSPPSQVAEAIWQLAHSGAL
LKHVAASLQRSLWGLLLAIALGVTLGLLMGWFTRFDAIVDPILQLFRQTSAFALFPVFIL
FLGIGELSKVAIIFWASFWPVLLSTIGGVRQVDKLLIHSARSMGASNLFVFRKVVLPAAT
PSIFTGIRLAGTYCVTALVAAEMIGAHSGLGFLTLNSQEVFQIPTMYAGILLLAVLGLVL
NTILASIERRLTRWRKGLTLNA