Protein Info for ABZR87_RS17725 in Ralstonia sp. UNC404CL21Col

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 PF00005: ABC_tran" amino acids 33 to 173 (141 residues), 120.5 bits, see alignment E=1.3e-38

Best Hits

Swiss-Prot: 41% identical to SSUB_BACC1: Aliphatic sulfonates import ATP-binding protein SsuB (ssuB) from Bacillus cereus (strain ATCC 10987 / NRS 248)

KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 100% identity to rpi:Rpic_4011)

Predicted SEED Role

"Taurine transport ATP-binding protein TauB" in subsystem Taurine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (264 amino acids)

>ABZR87_RS17725 ABC transporter ATP-binding protein (Ralstonia sp. UNC404CL21Col)
MQANSPTAPPLLDVRGVTLQYKTRQHLVTATYRVDFQVYPGERYILLGPSGCGKSTLLKA
IGGYLTPTEGEIRLKGQPVTKPGPDRMMVFQEFDQLLPWKTVKENVLFPLLSTGKLGARE
AEERALHYINKVNLTKFADHHPHMLSGGMKQRVAIARGMAMEPDVLLMDEPFAALDALTR
RKMQDELLQLWDETRFTVLFVTHSIPEAIRCGSRILILSPHPGQVRAELPSLARGDDDPE
RFKALEAEIHDMLFARAVEETHAD