Protein Info for ABZR87_RS17455 in Ralstonia sp. UNC404CL21Col

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 transmembrane" amino acids 139 to 158 (20 residues), see Phobius details PF12625: Arabinose_bd" amino acids 25 to 207 (183 residues), 126.4 bits, see alignment E=2.2e-40 PF12833: HTH_18" amino acids 258 to 333 (76 residues), 60.3 bits, see alignment E=2.9e-20 PF00165: HTH_AraC" amino acids 296 to 333 (38 residues), 31.7 bits, see alignment 1.9e-11

Best Hits

KEGG orthology group: None (inferred from 98% identity to rpf:Rpic12D_4085)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (338 amino acids)

>ABZR87_RS17455 AraC family transcriptional regulator (Ralstonia sp. UNC404CL21Col)
MKNNEKGTVSVSLVNEAVARARAHGVDMQPIMAAAGITPQMLAQPRSRVSSAQYGALWAG
IAQAMDDEFFGQDAHPMRWGSFVAMTQAALTARTGRQALARATGFLRLVLDDLHVRVEED
DQRVRLVFVHRKGTRVPPMFTYATWLIMVYGLVCWLVGRRIPFIAARFRCAAPPDAQEYR
LMFCDDMAFKHDASFVDLSPAFLELPVIQTAASIKTFLRDAPGNFIVKYRNPDSFAARVR
KTLRNLPVASWPASDAMALKLNVAEATMRRRLKLEGHTYQSIKDDLRRDIAIGQLQDTRR
TIADIAIAVGFAEPSAFHRAFRKWTGMRPTDYRLAGAD