Protein Info for ABZR87_RS17150 in Ralstonia sp. UNC404CL21Col

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 transmembrane" amino acids 27 to 51 (25 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 96 to 116 (21 residues), see Phobius details amino acids 136 to 155 (20 residues), see Phobius details amino acids 201 to 220 (20 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 24 to 120 (97 residues), 44.6 bits, see alignment E=8.3e-16 PF00528: BPD_transp_1" amino acids 52 to 217 (166 residues), 53.8 bits, see alignment E=1e-18

Best Hits

KEGG orthology group: K02029, polar amino acid transport system permease protein (inferred from 96% identity to rpi:Rpic_3923)

Predicted SEED Role

"polar amino acid ABC transporter, inner membrane subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (257 amino acids)

>ABZR87_RS17150 ABC transporter permease subunit (Ralstonia sp. UNC404CL21Col)
MTTEAVLLHLRYLLIGPYPNGPLAGAALTLWMALWACVVATAAGVGAALLLDRLDAMPRL
RRLARLLRGLLATLRAIPVLMLMFWAYFLIPMALGVAVPETATVAAALAAVGAAYITQSM
EAGLRAVGAGQRNAALALGMSPTQALLTVVLPQAWRIMLPSLANQWVSTVKDTSLAYIVG
VVELSTAASQVNSRTVAYPAEVFGAVAVLYFLLCTGIEALPNWLRAGPRTPVAQPAHMST
WQRFLRWRERPVSDAVT