Protein Info for ABZR87_RS16780 in Ralstonia sp. UNC404CL21Col

Annotation: YadA-like family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1764 transmembrane" amino acids 41 to 62 (22 residues), see Phobius details PF13018: ESPR" amino acids 1 to 45 (45 residues), 52.6 bits, see alignment (E = 1e-17) PF05658: YadA_head" amino acids 108 to 127 (20 residues), 14.7 bits, see alignment (E = 6.5e-06) amino acids 181 to 207 (27 residues), 17.1 bits, see alignment (E = 1.1e-06) amino acids 209 to 235 (27 residues), 12.9 bits, see alignment (E = 2.4e-05) amino acids 327 to 350 (24 residues), 12.9 bits, see alignment (E = 2.3e-05) amino acids 381 to 407 (27 residues), 23.7 bits, see alignment (E = 9.9e-09) amino acids 409 to 432 (24 residues), 12.3 bits, see alignment (E = 3.6e-05) amino acids 579 to 605 (27 residues), 28 bits, see alignment (E = 4.3e-10) amino acids 607 to 633 (27 residues), 11 bits, see alignment (E = 9.4e-05) amino acids 731 to 757 (27 residues), 26.3 bits, see alignment (E = 1.5e-09) amino acids 883 to 909 (27 residues), 28.1 bits, see alignment (E = 3.9e-10) amino acids 911 to 937 (27 residues), 11 bits, see alignment (E = 9.4e-05) amino acids 1035 to 1061 (27 residues), 35.6 bits, see alignment (E = 1.8e-12) amino acids 1049 to 1075 (27 residues), 28.4 bits, see alignment (E = 3.2e-10) amino acids 1229 to 1255 (27 residues), 16.5 bits, see alignment (E = 1.7e-06) amino acids 1461 to 1485 (25 residues), 20.4 bits, see alignment (E = 1e-07) amino acids 1578 to 1595 (18 residues), 12.6 bits, see alignment (E = 2.8e-05) amino acids 1583 to 1609 (27 residues), 27.7 bits, see alignment (E = 5.5e-10) amino acids 1597 to 1623 (27 residues), 20.8 bits, see alignment (E = 7.7e-08) PF05662: YadA_stalk" amino acids 520 to 563 (44 residues), 41.7 bits, see alignment (E = 2.5e-14) amino acids 672 to 715 (44 residues), 42.3 bits, see alignment (E = 1.6e-14) amino acids 824 to 867 (44 residues), 46.4 bits, see alignment (E = 8.6e-16) amino acids 976 to 1019 (44 residues), 46.1 bits, see alignment (E = 1.1e-15) amino acids 1112 to 1145 (34 residues), 46.8 bits, see alignment (E = 6.3e-16) amino acids 1171 to 1213 (43 residues), 47.3 bits, see alignment (E = 4.5e-16) amino acids 1328 to 1356 (29 residues), 15.9 bits, see alignment (E = 2.9e-06) amino acids 1516 to 1555 (40 residues), 45.4 bits, see alignment (E = 1.8e-15) amino acids 1642 to 1682 (41 residues), 40.6 bits, see alignment (E = 5.7e-14) PF03895: YadA_anchor" amino acids 1704 to 1764 (61 residues), 58.9 bits, see alignment (E = 8.3e-20)

Best Hits

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1764 amino acids)

>ABZR87_RS16780 YadA-like family protein (Ralstonia sp. UNC404CL21Col)
MNKSYKTIWNEALGAWVAASELDKAKGKGGTVRRIGRASGLNSASGAMTLIAAAVAVFGA
AVPEEALAQANCATAPYNFYSGSMTCVGFMSTATQGGATAVGYGANSTGLNGVAVGFQSI
ASGVNSINVGARTAPGTGATADSTIAIGTDVTANATSAIGVGVQAAASGTSAIALGALAK
ATATNAVALGTNAQATNAAATAVGNGAKASGNTALALGGQALAIGDGTVAAGQGAGAGST
TGNTGSVAVGIATGTLVSGAQNSAVGGGIASAMRGAGSGVTGTRNVAFGTGDGTVTYDGT
LAASAGNLVSGNDNVAIGTNAGIGVTANGTTSVGLNAKASATGSIAIGVQSTAAGGFGVA
VGNASVASQSGATAMGSGATASGVSGTAIGNNAVASGTNAVAMGLGARATATNSVSIGTN
NVVSGANSGAIGDPSTITGSGSYSLGNNNTINANNAFVVGNGVTVAGGLDGAVVLGNAST
VSAAVQTPNATIAGTTYTFAGGAPAAGDVVSVGSAAAPRQIQNVAAGRLSSSSTDAVNGS
QLFATNQAVNGVSTTVNNIQNGAGIKYFHANSTAADSQATGTDSVAVGPLAVASGANSVA
TGNGAQAQAANALALGATARATNAGDVALGSGSVTAASNPTASAVIAGVTRNFAGTNPTS
VVSVGAVGAERQITNVAAGQLSNSSTDAVNGSQLFATNQAVDGVSTTVNNIQNGAGIKYF
HANSTAADSQATGTDSVAVGPLAVATGVNSVAAGNGAQAQAASALALGATARATNAGDVA
LGSGSVTAASNPTASAVIAGATRNFAGTNPTSVVSVGALGAERQITNVAAGRLSNSSTDA
VNGSQLFATNQAVDGIFTTVNNIQNGGGIKYFHANSTAADSQATGTDSVAVGPLAVATGA
NSVATGNGAQAQAANALALGATARATNAGDVALGSGSVTAASNPTASAVIAGATRNFAGT
NPTSVVSVGALGAERQITNVAAGRLSNSSTDAVNGSQLFATNQAVDGIFTTVNNIQNGAG
IKYFHANSTAADSQATGTESVAVGPQAVASGANSVAMGNGARATAANSVALGANSTTTAN
LGAAAYNPGTAALAGTSPVGEVSVGSAGNERRITNVAAGSAATDAVNVSQLQSVQTELTQ
TKNDALLWDPTANGGTGAFSANHGGTGPNVITNVAPGALNATSTDAVNGSQLFATNQNVT
NLGNSITNIQNGGGIKYFHANSTAADSQATGTDSVAIGPLAVAAGATSLAAGNGAQAQTA
NALALGSLSTVSVAGGVAIGSGAISDRPIASGIGSIPAGSQAVPFNTSDGTLLGAVSFGS
AAGNTYRQLTNVADGTGQHDAATIRQLTGALQSFAVTPTLYFHANSAAADSLAVGSQSVA
VGPTTVVNGDNGVGIGNGAIVQQTAPGGIAIGQASTSGQADAIALGSGSTANGAQSIAQG
ANANAALAGGIAIGSGAKSNAVDAMALGSGANATFANSVALGAGSLTSVGALTNYMAFGL
TAPQTSSGELNVGNRQITGVAAGRLGSDAVNVSQLQAVQQQLTTYINNNGGTFTSTSPNG
STNNTPPATPGPNSSVGGTGAVASGSNSTALGNSSQATANNSTAVGTGAVATGSGSTAIG
AGSNDGGRTDVVSVGSSTLSRQVINVAAGTAPTDAVNVSQLNNAITQANNYTDNQVAGLR
NSIDSYRRDADGGTAMAMAMAGLPQPTGPGKSMVAVAGSVYNGQSGQAVGISTVSENNRW
IYKAAVSTNTRGTYGAVVGAGYQW