Protein Info for ABZR87_RS16775 in Ralstonia sp. UNC404CL21Col

Annotation: chloride channel protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 53 to 75 (23 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details amino acids 159 to 183 (25 residues), see Phobius details amino acids 195 to 219 (25 residues), see Phobius details amino acids 230 to 255 (26 residues), see Phobius details amino acids 275 to 300 (26 residues), see Phobius details amino acids 313 to 388 (76 residues), see Phobius details amino acids 396 to 415 (20 residues), see Phobius details PF00654: Voltage_CLC" amino acids 68 to 411 (344 residues), 292.7 bits, see alignment E=2e-91

Best Hits

KEGG orthology group: None (inferred from 95% identity to rpf:Rpic12D_3980)

Predicted SEED Role

"Chloride channel protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (436 amino acids)

>ABZR87_RS16775 chloride channel protein (Ralstonia sp. UNC404CL21Col)
MFSPLHIADQSVRRARRLWANYGVFWLGAVLVGLVSVAYAKAIDLGFELFRGIVSHAFWL
PIVITPLGAALAIWLTRRFFRGAEGSGIPQVIAALEDGRLSSSLLSLRIMFGKIVVSFLG
ILCGFTIGREGPTVQIGASLMYAMRRGYRRSSQHIERQLALAGAAAGLAAAFNTPLAGVV
FAIEELTRSFVARNSGTLITAIIFSGVVALGLQGNYLYFGRIQAIGQFHLALVPVVIGAS
ALCGVVGGVFCWLLLNIPRWMPARLVDIRQTQPVWFAFLCGVAIALIGLVSGGTTFGSGY
AEARGLLETHQALSPFYAVLKFGALIASYLSGIPGGIFAPSLAIGAGLGNVMSLVTSAIP
LPSLAALCMVGYLAAVTQSPITSFVIVMEMIDGHEMVLPLMAVALLSSQVSKALTPSFYH
TLAHRFRAAVPRPAAQ