Protein Info for ABZR87_RS16650 in Ralstonia sp. UNC404CL21Col

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 53 to 77 (25 residues), see Phobius details amino acids 88 to 109 (22 residues), see Phobius details amino acids 114 to 136 (23 residues), see Phobius details amino acids 146 to 167 (22 residues), see Phobius details amino acids 174 to 196 (23 residues), see Phobius details amino acids 230 to 250 (21 residues), see Phobius details amino acids 260 to 279 (20 residues), see Phobius details amino acids 289 to 308 (20 residues), see Phobius details amino acids 313 to 339 (27 residues), see Phobius details amino acids 350 to 371 (22 residues), see Phobius details amino acids 377 to 397 (21 residues), see Phobius details PF07690: MFS_1" amino acids 29 to 200 (172 residues), 74 bits, see alignment E=5.6e-25 amino acids 229 to 394 (166 residues), 36.7 bits, see alignment E=1.2e-13

Best Hits

KEGG orthology group: None (inferred from 89% identity to rpi:Rpic_3845)

Predicted SEED Role

"4-hydroxybenzoate transporter" in subsystem Cinnamic Acid Degradation or Gentisare degradation or Phenylpropanoid compound degradation or Salicylate and gentisate catabolism or p-Hydroxybenzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>ABZR87_RS16650 MFS transporter (Ralstonia sp. UNC404CL21Col)
MSTSPASQTPATATAAPDTKGLIRLLTAGAGISVACIYLNHPLLGLIGRDLAIAPHALGV
LPTLTAAGYASGIFFFGPLGDRYDRRIVILWKAVLLTLALIASCLAPNLTLLAAAGFAVG
LSATIAQDFVPSAAAISTDHNRNRNIGTVMTGLLIGIVSSRVFSGIVADHFGWRAAFGVS
AVAIVGLAIAVRAAHFGVAPPATMRQPYLVLLRSLGTLFAQHPRLRASAITQAFIGIAFS
GFWSTVALHLTGTLGLSTGQAGLLGFAGAAGALGASIAGRLSGRVAPGHIAAGGALLMAV
TFAAMALFPQSLIAIVIGTLVFDVGVQAALVSHQTIIYALAPEARSRINAVFMTALFIGM
SLGAYGASLAWTNGRWTGLMAFCTAAALVALGLRVMFNARQGAR