Protein Info for ABZR87_RS16335 in Ralstonia sp. UNC404CL21Col

Annotation: branched-chain amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 transmembrane" amino acids 6 to 30 (25 residues), see Phobius details amino acids 36 to 56 (21 residues), see Phobius details amino acids 63 to 82 (20 residues), see Phobius details amino acids 90 to 109 (20 residues), see Phobius details amino acids 129 to 146 (18 residues), see Phobius details amino acids 178 to 202 (25 residues), see Phobius details amino acids 215 to 240 (26 residues), see Phobius details amino acids 252 to 271 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 12 to 262 (251 residues), 135 bits, see alignment E=1.5e-43

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 97% identity to rpf:Rpic12D_3908)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (302 amino acids)

>ABZR87_RS16335 branched-chain amino acid ABC transporter permease (Ralstonia sp. UNC404CL21Col)
MEWFDNFWSVYSNLVLTLGINALLALSIYLTLSCGLLAMANAAFMGIGAYTAALLTMNAE
MPFSVALLGGMAAPAVVAVVIGRPTLRLSGVYLAMATLGFGEVVRVLILNTENWTGGALG
LNGIPQLTEWWHVAVAVLATLFVLARMRRSKVGRAFEAIKEDETAAGLMGINVAGTKLLA
FTLGAAIAGLAGALNAHLTFFIGPNEFGFDRGVEILTMTILGGTNGLTGPVLGSLILSLL
PELLRAFKDFRLVVNGVILMVIVLFLPKGIWDPARFARWFGIKRGGTMPGTAATPAASNE
SH