Protein Info for ABZR87_RS16320 in Ralstonia sp. UNC404CL21Col

Annotation: PAS domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 893 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 282 to 303 (22 residues), see Phobius details PF02743: dCache_1" amino acids 36 to 260 (225 residues), 70.7 bits, see alignment E=5.6e-23 TIGR00229: PAS domain S-box protein" amino acids 355 to 474 (120 residues), 37.6 bits, see alignment E=2.2e-13 amino acids 477 to 598 (122 residues), 38.9 bits, see alignment E=8.3e-14 amino acids 600 to 722 (123 residues), 41.7 bits, see alignment E=1.2e-14 PF00989: PAS" amino acids 356 to 465 (110 residues), 25.8 bits, see alignment E=3.7e-09 amino acids 480 to 588 (109 residues), 29.6 bits, see alignment E=2.3e-10 amino acids 605 to 702 (98 residues), 23.2 bits, see alignment E=2.4e-08 PF08448: PAS_4" amino acids 362 to 470 (109 residues), 48.9 bits, see alignment E=2.8e-16 amino acids 482 to 592 (111 residues), 33.7 bits, see alignment E=1.5e-11 amino acids 610 to 716 (107 residues), 69.3 bits, see alignment E=1.3e-22 PF08447: PAS_3" amino acids 378 to 460 (83 residues), 34.4 bits, see alignment E=8.9e-12 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 723 to 885 (163 residues), 135.6 bits, see alignment E=1.3e-43 PF00990: GGDEF" amino acids 727 to 881 (155 residues), 146.8 bits, see alignment E=2e-46

Best Hits

KEGG orthology group: None (inferred from 79% identity to rpf:Rpic12D_3905)

Predicted SEED Role

"FIG00974280: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (893 amino acids)

>ABZR87_RS16320 PAS domain-containing protein (Ralstonia sp. UNC404CL21Col)
MKLTLKSQAAIMATVISVTVVSLFGWSQREPIRREVMAQIKVQQTALVKESAEDLKQRLD
TYLGVLERTAQQMRTVRFNSPVEEAAFYQSIQPVSGLFDGVFLASADGKVTTTSTRRASV
VGIDISDRDYFRQVMVVDQPTISAPLRNRVGGEPIVIMAAPVHDRDGNLVGLIGASLYLL
KPNFLGDLRDMRVGQTGHVYLATRGENPVYIVHPEADKTLAPLDADPEAAAAFRADPDAL
PERGGDVVTTQDIIAAGWTLAAVLPGAEANRQLFLMRQRFRWSLLVLAALIGVSVWAAML
WLLRPLGRLHAAMTQLSATDLRNAPPLERLGASAEIDAVSTAFHRLMGEVVRQRAELEAV
NDASPLGLFRSDADGRTVYTNEAYRRLLGATHEEALADVWLARLHPDDRDAIMAGWRDAV
ARGAGYHAEQRVIVPGLGERLLVVTTAPVRVDGEVVGHVGAMEDITVRARAQQASRVLTK
ILDSTTDFVAQSDIQGNVTYMNPAGRRFAGIPLDANLEGLTVADFYPPETMGWLREVAVP
AAARDGVWIGETTVRGAEGQVVPINHMIIAHRDPAGHMEYFSSVMRDITQDKAAKEALQR
SRETLQTVTDALPALVAFIDTDERFRFLNAAYEKAYGRSASSMLGQTLREVVGDDAYSLL
RDALRRALGGETMVFERELRGRDLYRCEEVSYLPQFDAQGRVAGVHSVTLDITERKKQEL
RLRALTTTDHLTGLANRAGFEERLLAALDQARVTGSTGALLLVDLDGFKVVNDTHGHAVG
DALLRTFAQRLARAVRPYDGVARFGGDEFAVILEHLSHPDDAKTVAANILSACNKPFRLR
EAMVQVGASIGIATFDARTLAQSAVFEAADEALYEAKSRGKGLFVSADELSTG