Protein Info for ABZR87_RS16055 in Ralstonia sp. UNC404CL21Col

Annotation: outer membrane lipoprotein chaperone LolA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR00547: outer membrane lipoprotein carrier protein LolA" amino acids 10 to 213 (204 residues), 58.7 bits, see alignment E=2.8e-20 PF03548: LolA" amino acids 38 to 205 (168 residues), 137.6 bits, see alignment E=1.7e-44

Best Hits

Swiss-Prot: 98% identical to LOLA_RALPJ: Outer-membrane lipoprotein carrier protein (lolA) from Ralstonia pickettii (strain 12J)

KEGG orthology group: K03634, outer membrane lipoprotein carrier protein (inferred from 100% identity to rpf:Rpic12D_2151)

Predicted SEED Role

"Outer membrane lipoprotein carrier protein LolA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (215 amino acids)

>ABZR87_RS16055 outer membrane lipoprotein chaperone LolA (Ralstonia sp. UNC404CL21Col)
MFVLKARHLMAAGLVSLAAWSAGAYAGAVEQLNAFVSNVSTARGEFVQRQVKGGTNGSPL
RVAGTSNGDFVFSRPGRFVWRYVKPYEQQLSADGQTLYIFDKDLNQITERKLDASLGSSP
AAILFGSNDLAKNFTLKEGGTKDGIDWAELTPKAKDTQFERIAIGFRSGELQGMELRDAF
GNTTLLTFSNIQKNPQLPANVFRFTPPKGADVIKQ