Protein Info for ABZR87_RS15925 in Ralstonia sp. UNC404CL21Col

Annotation: cytochrome c-550 PedF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 161 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details TIGR04494: cytochrome c-550 PedF" amino acids 13 to 159 (147 residues), 212.2 bits, see alignment E=1.1e-67 PF13442: Cytochrome_CBB3" amino acids 63 to 154 (92 residues), 44.5 bits, see alignment E=1.6e-15 PF00034: Cytochrom_C" amino acids 67 to 156 (90 residues), 25.3 bits, see alignment E=3.2e-09

Best Hits

KEGG orthology group: None (inferred from 99% identity to rpf:Rpic12D_2091)

Predicted SEED Role

"Cytochrome C550 (Soluble cytochrome C)" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (161 amino acids)

>ABZR87_RS15925 cytochrome c-550 PedF (Ralstonia sp. UNC404CL21Col)
MKTPRNLLALLSACALLAGGLPAAASAHGDVTPQAVDTHTLPQLGADWRQDNPYRTGPAH
DEALRIGSSAFNQNCARCHGLEAISGGIAPDLRKLDTDCMSLADAKKKEACYGEVSQYFT
ATVRHGRTRDGRVYMPPFDGVLSQEAVWSIKTYLESRRVQE