Protein Info for ABZR87_RS15880 in Ralstonia sp. UNC404CL21Col

Annotation: bifunctional glycoside hydrolase 114/ polysaccharide deacetylase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 953 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF03537: Glyco_hydro_114" amino acids 44 to 281 (238 residues), 78.1 bits, see alignment E=3.1e-26

Best Hits

KEGG orthology group: None (inferred from 80% identity to rpi:Rpic_2475)

Predicted SEED Role

"Extracellular Matrix protein PelA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (953 amino acids)

>ABZR87_RS15880 bifunctional glycoside hydrolase 114/ polysaccharide deacetylase family protein (Ralstonia sp. UNC404CL21Col)
MIGRLAAVLTAVLVCMPWAARAQQTAGASENTSSAAASAPNIAWYYGDKPPVGQLRAFDA
VVVEPDHGFDPSQFKTPSTQWFAYVSLGEVTPERRWFKELPKAWLLGDNAAWASRVVDQA
QSEWPAFYVEHVIKPLWDKGYRGFFLDTLDSYQLVAKDDASRAAQEAGMVRVIRAIKARY
PDAKLIFNRGFEILPQVHDQAYAVAFESLYRGWDQGAKQYKEVNDADRAWLMGQARKIRD
EYHLPVISIDYCPPADRACARDTAKRIKAQGLIPYVIDPALSTIGVGRIEVLPRKVLILQ
ERAPRTTIETSEGVRFVAMPLNFLGYDVEYADINQPLPADVPPDRYAGVVVWVNTSPVKQ
VGALNAWVRARMRDGVRIAFMNRFGLPVDGSLADMLHLQYVRGMANAGTSSGGPVSVVSQ
DRIMGFEMPPRPLARETVPIRAGASAQSLLRLKSGSQEFDAAAITDWGGYVMYPFAVFAL
ETIDQARWVVQPIEFLRRALALPDMPIPDLTSENSRRLMLVHVDGDGFASRAEFPGPEYS
GEVLLQEVWDKYRIPTTLSVIEGEVGPTGLYPKISPRLEGIARRMFALPYVELGSHTYSH
PFDWSRTVQSPTAGPGKDAGGGDTAFALTIPGYKFSLDREIAGSIRYIDERLAPPGKRVK
VLQWSGDCRPPEVAVRMAWQAGVVNINGGDTIITRSSPSWTDIASIGIDKGPGAYQVFAP
NQNENVYTNDWTGPYYGFERLIETMQMTDAPYRFKPINIYYHMYSGTKLASLKALKKDYD
YALSQPVFPIYSTEYVAKVMDFRDMAIARDDDNWIVRGNGDLRELRWMAPGTPRLADARG
VVGYDKAPGGIYIHMDNGAARFAVTPAAETAKPAYIAEAAAFVRDFTRSGNGLSFEAGGY
YKPFVRLANVGACRVKVNGAPAHTTRAQGDTVRVDLNGVAAQSVTYQRIDVVC