Protein Info for ABZR87_RS15875 in Ralstonia sp. UNC404CL21Col

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1362 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 751 to 765 (15 residues), see Phobius details PF13429: TPR_15" amino acids 532 to 812 (281 residues), 308.3 bits, see alignment E=2.6e-96

Best Hits

KEGG orthology group: None (inferred from 85% identity to rpf:Rpic12D_2080)

Predicted SEED Role

"Extracellular Matrix protein PelB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1362 amino acids)

>ABZR87_RS15875 tetratricopeptide repeat protein (Ralstonia sp. UNC404CL21Col)
MWSADLTPRERLLPPWLIGTLGALIGLALALMFPRERLEARLLEGGKVDALSVAYLEAWL
RVRPNDGEFLSVLAAQYVRTGRLDEAEAMLNRMRALHDKSLEREALLLEIAIREQRAYAL
APNDPQRASILNDLRGLLKQALDYRWTAAELEILAGKARALDQGAIAVQLYQRLAKQDVA
RAAQWQARTAEIALGVGEYRAAAAANFAAQASAKSLDEQRRYFIAGLKALQGGNLLDDAM
TEAQRRAGPLLDDTETLRFLTRLALACNRPDLADQYARRLLHLSWRQTEEGIALAAGAAR
HDWTFAGRPEPLPSPTDAVFMDGPEGLARRQRHVARIRRVADKVSDGAAPAAATAQPTGT
EAIARGIAPFNADDYDLAYRVFMSSGNLNDAMRVAEAAVRQRPDLKIWTERAAQVSEWNR
QPMSALKYWLAYAQSTGDDAAWQNVLRLAPALNEDHAYLAGLRYQARRQPGDMKLLDQVI
AAYERLGEPVEGLAYLNSIARGPHRQAILERYAMLAERAGKDDQAYDTYVRLQKEFGPNA
RYALKLANMLYVRAQFEQALSAMEVASKVASPTDDLYWRTFAQLARLNQRDDLSREAYRQ
LLIGGNAQPDDLSAMIDFYDASPIDAGRLAELAFHKSGTMASLQQAIYYYTRARAFRRID
GLLASLTPEQRRAAEQSPGVLGARAEYFRQSGHWDLAMRDLRRAVSLPDAGSDVKAAFLW
GLLDSGQNDELKRALTLWRGEAENDSAYWGAYAAAGLQLFDANLALRFLGRQGKSMRNDP
LWLLAFADAREMAGQADAAWRLRREAWWLLWRADGANGAGSTDRAENANAKDKAPASRRV
GTRVVVGSNGAGNDAVPLEEGARTELRARRIALAQTFGSGDLAQRLLIELLRDDRRATRQ
AREGGSATVQKSELGDIDTLPPEPPEDPADKRKNTRVSDQLVSAVAKEAALGWALSQEAN
DLARAWLLQQYTRRMTRPAYAEISIALAERDLQTLNRLLDDTPDRIPLYNRIDANTLTDR
LGEAQRLSFEGLTTAPDDEQIHQRLQETLLTNAQALEPRETWFKQAPLTYFESSAAAGIR
LTDHYSMLVRATQRNQRSTDETQLTGVPAQDRRVDWISQYQTQDSQWKGTVGWRQGLASF
YAFRLDGLLGQTGPFGTELSVGRNQPAEETTQLRVGGVKDLVSIGGNWRLTQREYIRARI
EGNRFYGQDRSFLGSGMVFDAEAGYRFRVEYPDYTIRVVGTRANYSASGTPSALLGRLLP
AAATADTAPDATAFMPQSFTQFGLLFGFGTDYLDRYTRAWRPFMDVGLLHDNREGWGTQL
QLGVAGSVFGNDHLALVFSHASITRAGTSPMTEIGLRYRWLY