Protein Info for ABZR87_RS15540 in Ralstonia sp. UNC404CL21Col

Annotation: DEAD/DEAH box helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 498 PF00270: DEAD" amino acids 42 to 215 (174 residues), 167.5 bits, see alignment E=3.4e-53 PF04851: ResIII" amino acids 57 to 209 (153 residues), 32 bits, see alignment E=1.7e-11 PF00271: Helicase_C" amino acids 252 to 363 (112 residues), 107.3 bits, see alignment E=8e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpf:Rpic12D_2015)

Predicted SEED Role

"ATP-dependent RNA helicase Bcep18194_A5658" in subsystem ATP-dependent RNA helicases, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (498 amino acids)

>ABZR87_RS15540 DEAD/DEAH box helicase (Ralstonia sp. UNC404CL21Col)
MNTATMSEASEAPANESVTFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGRDVMG
AAQTGTGKTAGFSLPIIHNLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKY
TALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRM
LDMGFLPDLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATAENVR
QVIYTVPDNHKQAALVHLLKQRAEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHG
DKTQTERMQTLEAFKQGTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTG
RAGASGDALSLFAPGDERLLADIEKLIKRNLPREQLADFDPTGEQARDRERRERDEKRAR
SEVRRARERDERNGARVLDHTIVRPAFRPSDDPFFNRPYESSVPAESAEAAKPAQPAGHP
RTAKRPIAALLGGVPRKR