Protein Info for ABZR87_RS14700 in Ralstonia sp. UNC404CL21Col

Annotation: PaaI family thioesterase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 transmembrane" amino acids 22 to 42 (21 residues), see Phobius details TIGR00369: uncharacterized domain 1" amino acids 23 to 136 (114 residues), 37.5 bits, see alignment E=1.1e-13 PF03061: 4HBT" amino acids 53 to 129 (77 residues), 47.5 bits, see alignment E=1.8e-16 PF13622: 4HBT_3" amino acids 53 to 139 (87 residues), 32.2 bits, see alignment E=1.1e-11

Best Hits

KEGG orthology group: None (inferred from 95% identity to rpi:Rpic_2176)

Predicted SEED Role

"PaaI"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (145 amino acids)

>ABZR87_RS14700 PaaI family thioesterase (Ralstonia sp. UNC404CL21Col)
MTTTPNLAVPTGFELLNKPSPFLTMLGPVYAKGMGASMVMGFHVQHHHLNRRGIVHGGVV
ASLADAALGYCLAEPGEGTGGALAMSTASLTVDFIASAGEGDWIEITPEGLRTGSKLAFA
QALFHRGDRLIARASAVFAVLGGRV