Protein Info for ABZR87_RS14635 in Ralstonia sp. UNC404CL21Col

Annotation: peroxide stress protein YaaA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 PF03883: H2O2_YaaD" amino acids 1 to 242 (242 residues), 307.2 bits, see alignment E=7.5e-96

Best Hits

Swiss-Prot: 97% identical to Y2164_RALPJ: UPF0246 protein Rpic_2164 (Rpic_2164) from Ralstonia pickettii (strain 12J)

KEGG orthology group: K09861, hypothetical protein (inferred from 97% identity to rpf:Rpic12D_1840)

Predicted SEED Role

"UPF0246 protein YaaA" in subsystem YaaA

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (257 amino acids)

>ABZR87_RS14635 peroxide stress protein YaaA (Ralstonia sp. UNC404CL21Col)
MIIVLSPAKSLDYDTPPRTKTHTLPDFIARSAELIEVLRKLSPAQIGTLMHISDPLAALN
ATRYADWSPEFTAENSKQAALAFDGDVYGGLDVNSLAVDDLQFAQKHLRILSGLYGMLRP
LDWMQPYRLEMGTRLANPRGKDLYAFWGDEVTLALNKLFKQDDDPVLVNLASEEYFKVVR
PKVLKARIVAPVFEDWKNGQYKIISFYAKRARGLMARYAIEHRITDPRKLKAFDVDGYAF
AAADSDDERWVFRRKLT