Protein Info for ABZR87_RS14370 in Ralstonia sp. UNC404CL21Col

Annotation: TIGR00645 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 179 transmembrane" amino acids 21 to 47 (27 residues), see Phobius details amino acids 59 to 84 (26 residues), see Phobius details amino acids 110 to 131 (22 residues), see Phobius details amino acids 142 to 162 (21 residues), see Phobius details TIGR00645: TIGR00645 family protein" amino acids 11 to 168 (158 residues), 200.4 bits, see alignment E=1.3e-63 PF03350: UPF0114" amino acids 15 to 131 (117 residues), 122.4 bits, see alignment E=6.3e-40

Best Hits

Swiss-Prot: 63% identical to Y1258_PASMU: UPF0114 protein PM1258 (PM1258) from Pasteurella multocida (strain Pm70)

KEGG orthology group: None (inferred from 99% identity to rpi:Rpic_2101)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (179 amino acids)

>ABZR87_RS14370 TIGR00645 family protein (Ralstonia sp. UNC404CL21Col)
MKSPIAPLRPIPRLIFFSRWLQLPLYLGLIIAQAAYVYLFVVEVWHLVSHLGDMDETKIM
LAVLGLIDVVMISNLLIMVIIGGYDIFVSKLGIEGHEDEPEWLDHVNAGVLKVKLSMALI
SISSIHLLKTFIDAAQKDTHTILWQVAIHVAFLVSALVMAWVDRIVSHAHPHGEAADAH