Protein Info for ABZR87_RS14335 in Ralstonia sp. UNC404CL21Col

Annotation: CocE/NonD family hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 671 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details TIGR00976: hydrolase CocE/NonD family protein" amino acids 109 to 667 (559 residues), 266.4 bits, see alignment E=3.5e-83 PF02129: Peptidase_S15" amino acids 112 to 382 (271 residues), 183.1 bits, see alignment E=1.3e-57 PF08530: PepX_C" amino acids 416 to 661 (246 residues), 106.2 bits, see alignment E=3.8e-34

Best Hits

KEGG orthology group: K06978, (no description) (inferred from 96% identity to rpf:Rpic12D_1770)

Predicted SEED Role

"peptidase S15"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (671 amino acids)

>ABZR87_RS14335 CocE/NonD family hydrolase (Ralstonia sp. UNC404CL21Col)
MQMGNPRVRHGRMLMSALLCAALSLSGCGGGDGSTVANSTPADSNTTTQPTQPTQPAQPA
AVNWTTLGTRTTPAQPGTSITSNAGAKWADYNPPALYAGVAKQATQYITMPDGTKLAAYV
TLPADASGKAATGTFPTVLVQTSYNGGNAQYEASIGAALGAADPYIVQHGYATVVVDVRG
TGQSQGTWDAFGADEQSDYGHVVDWVTQQPWSNGAIGLYGVSYLGITTVITAAQNHPAVK
AAFPIVPIGDGYRDIVFTGGQTNLTFIPAWFGLVSVLSLTDPTLVTDPTIGLPAVLQHLV
SAVTTFQLPTMLQALLGSTATAYDGAFWATRSPLENDGKIKVPTFVVGGLHDLFQRSEPL
TYESIKTQAPAKLLIGPWTHLQAALGSGLPVDGVPPLNHIQLQWFDQYVKGMKVGADALP
NVTQYVTGLGHYATATDWPHPQVQAQQLFLRGDKSLSTTAPAANEASNKVAQQPLNGACS
ISLSQWTAGLTGFIPLACQTDDTLAEAADVKFETPPMPADVYLNGPIEADVWISTTALDA
GVSVRIDDVDAAGNVTPLTDGLQTASLRAVDAGRSRTMNGLMIQPWHPFTPGSVQPLVPG
QAVMVPVEVFPTSALIAKGHKLRVAVGASNLPQGVPPLPTLLNSLIGVLTVYSDAAHPSK
VVLPVVPATAL