Protein Info for ABZR87_RS13310 in Ralstonia sp. UNC404CL21Col

Annotation: peptidoglycan editing factor PgeF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 PF02578: Cu-oxidase_4" amino acids 23 to 266 (244 residues), 237.6 bits, see alignment E=6.8e-75 TIGR00726: YfiH family protein" amino acids 44 to 267 (224 residues), 171 bits, see alignment E=1.2e-54

Best Hits

KEGG orthology group: K05810, conserved hypothetical protein (inferred from 95% identity to rpf:Rpic12D_1590)

Predicted SEED Role

"COG1496: Uncharacterized conserved protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (269 amino acids)

>ABZR87_RS13310 peptidoglycan editing factor PgeF (Ralstonia sp. UNC404CL21Col)
MPTSTDWIVPDWPAHPHVKALATTRLGGVSTGPYGLAGGLPGGLNLGQHVGDAPDAVDQN
RRILRAALPAEPTWMEQVHGTGVADLDQLVGTSAPVVADAAVASWRDRVCVVMTADCLPV
LLSDARGVTVGAAHAGWRGLCGGVIERTLEAMMQRLRASGQEADPTWLAWLGPAIGPSCF
EVGAEVRQAFIDAAQPDELPATEAAFVEGASTGKFFADLYALARLRLARVGCTDVYGGGL
CTMTDAERFYSYRRERTTGRMATLIWRAE