Protein Info for ABZR87_RS13180 in Ralstonia sp. UNC404CL21Col

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1039 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 35 to 35 (1 residues), see Phobius details amino acids 341 to 361 (21 residues), see Phobius details amino acids 372 to 395 (24 residues), see Phobius details amino acids 404 to 427 (24 residues), see Phobius details amino acids 441 to 465 (25 residues), see Phobius details amino acids 477 to 503 (27 residues), see Phobius details amino acids 542 to 561 (20 residues), see Phobius details amino acids 872 to 892 (21 residues), see Phobius details amino acids 900 to 920 (21 residues), see Phobius details amino acids 926 to 946 (21 residues), see Phobius details amino acids 974 to 994 (21 residues), see Phobius details amino acids 1000 to 1023 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 10 to 1022 (1013 residues), 565.5 bits, see alignment E=1e-173

Best Hits

KEGG orthology group: None (inferred from 78% identity to cti:RALTA_A1382)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1039 amino acids)

>ABZR87_RS13180 efflux RND transporter permease subunit (Ralstonia sp. UNC404CL21Col)
MEHSRFNLSRWALEHQPLTRFLLVALLLGGIFAYSKLGQDEDPPFTFRAMVVQAFWPGAT
AEQMSRQVTDKIEKALQEVPYAWKIRSYSKPGETLVTFQLADTSPAKETQQLWYTVRKKV
GDIAPTLPQGVRGPYFNDDFGDVYGSIYALSADGFTYRQLNDYADAIRQQLLRVPNVAKV
ELLGDQDEKIYIEFQQAKLSQMGLDINSIATQISQQNNIGPSGVLVTPTDNVQIRLSGQF
SDIRDLENLTLRGPGGTTNIRLGDIATVKHGYVDPPHAKMRFNGKEVIGLGISMTKGGDI
IQLGKDLRATVDKIRAKLPMGIEMQQVQNQPKSVQSSVGEFVHVLIEAVVIVLGVSFLSL
GLHTKPKLRIDVWPGLVVGLTIPLVLAVTFLFMNIFDIGLHKISLGALIIALGLLVDDAI
IAVEMMVRKLEEGFSKMEAATFAYTSTAMPMLTGTLITATGFLPVGLARSTVGEYTFGIF
AVTALALVLSWFAAVVFVPYLGFLLLRTKSHVEGGGHHELFDTPFYNRFRGWVNWCVEYR
KTVIVITLVAFGLGVFGFKYVEKQFFPDSSRPELMVELWLPEGSSFNQTEAEAKRFEALM
RKEQNVDSVTLFIGSGAPRFYLPLDQILPQTNVAQAIVMPTSLEAREGVRQHVIGLLKSQ
FPHLRGRVKLLPNGPPVPYPVQFRVMGPDIGGVRKIADQVKAIMSANPNTVGVNDNWNEN
VKVLRLDIDQDKARALGVSTGSISQVTQTVMSGAPIAQYRDGDKLLDIVMRPQEDERNTL
DALQRVQVPTGSGRTVPLTQVARVGFAWEPGVIWRENRDYGITVQSDVVDGVQGPTVTAQ
INPLLDKIRADLPPDYQIKIAGAEEESANAGASIAAQMPLCIFIIFTLLMLQLHSFSRSV
MVFLTGPLGLIGAAATLLLLRAPMGFVAQLGITALIGMIIRNSVILVDQIEQDVAAGVPT
WNAIVEAAVRRFRPIILTAAAAVLAMIPLSRSVFWGPMAAAIMGGLIIATVLTLLFLPAL
YAAWFRVKRPEAQAAAPTV