Protein Info for ABZR87_RS12855 in Ralstonia sp. UNC404CL21Col

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 468 transmembrane" amino acids 21 to 47 (27 residues), see Phobius details amino acids 59 to 82 (24 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 124 to 148 (25 residues), see Phobius details amino acids 169 to 187 (19 residues), see Phobius details amino acids 193 to 214 (22 residues), see Phobius details amino acids 243 to 262 (20 residues), see Phobius details amino acids 282 to 304 (23 residues), see Phobius details amino acids 312 to 331 (20 residues), see Phobius details amino acids 337 to 362 (26 residues), see Phobius details amino acids 376 to 397 (22 residues), see Phobius details amino acids 403 to 425 (23 residues), see Phobius details PF00083: Sugar_tr" amino acids 21 to 219 (199 residues), 74.9 bits, see alignment E=6.2e-25 PF07690: MFS_1" amino acids 25 to 383 (359 residues), 79.9 bits, see alignment E=1.7e-26

Best Hits

KEGG orthology group: None (inferred from 96% identity to rpf:Rpic12D_1540)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (468 amino acids)

>ABZR87_RS12855 MFS transporter (Ralstonia sp. UNC404CL21Col)
MPHQPAPRAIAASNLQPRRAAVAAFIGTTIEWYDFYIYGLAAALVFGKVFFSKTLDPGIA
TLLSFVTLWAGFAARPIGGIIFGHLGDKIGRKTTLIITLILMGVATMGIGLLPGYAQIGM
WAPVGLVVLRVVQGVAVGGEWGGAVLIASESAPKRKSILYSAFAQQGSPTGNLLATLVFF
ALSALPTPQFMLWGWRVPFLLSALLVVVGMVIRLKLEESDDMKRVLAQKKTVKLPLKDVV
RDHWGLVLLGAGTLPLIHVTYLKSNFALAWATKELGYAQDTFLGIIAIALVVQFITQPLG
AWLVSRMDMRRAICLMVLPEFLLMPVMFFAIETKVYWIALLGMCLATVPHSMFYGAIGGI
LARVFPTRIRYTGLSLAYQLCSLVVGGGTPVFAQWMLNGTGNIVGVAVSSALYALVSLAC
TLILLNRTGYRADELSTAERADAMDLGQGDADASRAHTGPMGKPAAAV