Protein Info for ABZR87_RS12780 in Ralstonia sp. UNC404CL21Col

Annotation: HU family DNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 90 PF00216: Bac_DNA_binding" amino acids 1 to 90 (90 residues), 110.7 bits, see alignment E=3.3e-36 PF18291: HU-HIG" amino acids 3 to 89 (87 residues), 34.6 bits, see alignment E=1.8e-12

Best Hits

Swiss-Prot: 59% identical to DBHB_ECO57: DNA-binding protein HU-beta (hupB) from Escherichia coli O157:H7

KEGG orthology group: K03530, DNA-binding protein HU-beta (inferred from 99% identity to rpf:Rpic12D_1533)

Predicted SEED Role

"DNA-binding protein HU-beta" in subsystem DNA structural proteins, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (90 amino acids)

>ABZR87_RS12780 HU family DNA-binding protein (Ralstonia sp. UNC404CL21Col)
MNKTDLIDHVATQTDMSKAAAGRAIDALIDGIKDALCEGGSVTLVGFGTFLVGKRSSRNG
RNPRTGAAITIEGGKVAKFKPGKALKDALN