Protein Info for ABZR87_RS12725 in Ralstonia sp. UNC404CL21Col

Annotation: autotransporter-associated beta strand repeat-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1460 transmembrane" amino acids 44 to 64 (21 residues), see Phobius details PF13018: ESPR" amino acids 1 to 34 (34 residues), 37.1 bits, see alignment (E = 3.5e-13) PF12951: PATR" amino acids 430 to 456 (27 residues), 27.1 bits, see alignment (E = 3.5e-10) amino acids 495 to 524 (30 residues), 26.8 bits, see alignment (E = 4.3e-10) amino acids 592 to 616 (25 residues), 12.9 bits, see alignment (E = 9.8e-06) amino acids 684 to 708 (25 residues), 24 bits, see alignment (E = 3.3e-09) amino acids 776 to 800 (25 residues), 21.6 bits, see alignment (E = 1.8e-08) amino acids 868 to 892 (25 residues), 24.9 bits, see alignment (E = 1.7e-09) amino acids 961 to 991 (31 residues), 38.2 bits, see alignment (E = 1.1e-13) TIGR02601: autotransporter-associated beta strand repeat" amino acids 431 to 457 (27 residues), 20.4 bits, see alignment (E = 1.7e-08) amino acids 494 to 524 (31 residues), 24.6 bits, see alignment (E = 8.5e-10) amino acids 685 to 708 (24 residues), 20.7 bits, see alignment (E = 1.4e-08) amino acids 869 to 892 (24 residues), 26.1 bits, see alignment (E = 2.8e-10) amino acids 960 to 992 (33 residues), 37.1 bits, see alignment (E = 9.9e-14)

Best Hits

KEGG orthology group: None (inferred from 82% identity to bac:BamMC406_6171)

Predicted SEED Role

"Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1460 amino acids)

>ABZR87_RS12725 autotransporter-associated beta strand repeat-containing protein (Ralstonia sp. UNC404CL21Col)
MNRVYRLVWSRTLRAPQVVSELTKASHGGVDASGDTTHARRRASIISISVSLGLAGAALP
GWAATCSSSTIANCSAAGGAGIPDRSGNGGSGNGGGGGSSTLGGGSATVQVPGGPTSGGT
GGTGATNDSGQGGAGGSPAVVLAGDAVVNANAQGGSGQAFDGFNFAAGAGGGGAGVYSTG
ISVTVSNGVTVQGGAGGNGGAGTSGPASNGGGGGGGGAALVMVTPAADVNNQGTLIGGNG
GNGGSAGNPGGGGGGGDGLLTLGSGTQVTNIGSIVGGVGGASGGGGSTAGASGAGVNLAA
GFNVLSNVGTITGGAGNGGAAGAGVIANGAVIVNGGTISGGLFSDGVTRAAAIQFNGTNN
TLQLLTGSNIIGNLDVAAGAAAKITAGSAGLSLSNNVTLADATSRVTLDSTTTNLVVSGV
ISGAGSVGVTGSRTITLTGDNTYTGATTITTGTLQIGNGGTTGSVAGNIVNNGTLAFNRS
DAVTYAGTISGAGNLVQAGAGTLTISGTAGYGGSTAINAGTLALSGAGSIAASSGVVNNG
TFDISGTTAGATINALTGSGAVALGGRTLTLANAAGTFSGTIGGAGGLTVSGGAQTLSAI
NGFTGATTISGGTLVLSGAGSIAASSGLVNNGTFDISGTTSGATINALTGSGTVALGGRT
LTLANAAGTFGGAVGGTGGFTIAGGTQTLSGTNGFTGATTISGGTLALSGAGSIASSSGV
VNNGTFDISGTTSGATINALTGSGTVALGGRTLTLANAAGTFSGTIGGTGGLTVSSGAQT
LSAINGFTGATTISGGTLALSGAGSIAASSGVANNGTFDISGTTSGATINALTGSGTVAL
GGRTLTLANAAGAFSGAIGGTGGLTLNGGTQTLSGVNTYGGATTINAGTLALTGAGRLAS
GTTVTLTGATSALDLSAGASQTVAHLSGVAGSRVVLNGSALTLADDSSQAFGGSLSGSGS
LIKQGTGTLTLNGVSSSFSGSTTVAGGTLAVGDAANASAVLGGNVLVNALGTLRGHGTVS
GDVSSSGVVAPGGSIGTLSVGGNYTQASGGTLAIEVSPTDASQLRVGGAAALGGSLAIVF
DPGTYTARRYTVLSAANGVTGRFANVSTATAGASLGTLQTSVDYGANAVDLLLAEATAPG
APGAPGGGTVVAPTQTSIYTALGTTALLQAQSANAALLGRLSGPQYALGGANNVWATASG
SSTKVGGTGNAPGFLTHAYGFLAGAEGRMGAATVGAAGGYTHTTLGEDTTGASGAIDTLR
VALYGAQPMGAINLSATVGYGLDFFSQKRPFGSVGTAEGDHLAHEFTAATQASLPLEMGG
LRLAPHLGLRYAYVRGSGFGEDGAHGQNLQVGPDSARSLQPYVGVTLDKAFGDVRPVNVQ
LRLGYAHELMNAGRVVQVQSQDGTVFAAPGTDLPRSFLTTGASVTLQAAKATTVSLGVDA
TINTSHVSAQSAYVRVNHRF