Protein Info for ABZR87_RS12640 in Ralstonia sp. UNC404CL21Col

Annotation: septation protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 49 to 68 (20 residues), see Phobius details amino acids 80 to 99 (20 residues), see Phobius details amino acids 120 to 139 (20 residues), see Phobius details amino acids 151 to 170 (20 residues), see Phobius details PF04279: IspA" amino acids 1 to 175 (175 residues), 242.6 bits, see alignment E=1.6e-76 TIGR00997: intracellular septation protein A" amino acids 1 to 175 (175 residues), 206.9 bits, see alignment E=1.3e-65

Best Hits

Swiss-Prot: 98% identical to YCIB_RALPJ: Probable intracellular septation protein A (Rpic_1458) from Ralstonia pickettii (strain 12J)

KEGG orthology group: K06190, intracellular septation protein (inferred from 98% identity to rpf:Rpic12D_1499)

Predicted SEED Role

"Intracellular septation protein IspA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (190 amino acids)

>ABZR87_RS12640 septation protein A (Ralstonia sp. UNC404CL21Col)
MKFLFDLFPVILFFAAFKVAGIYVATTVAMVATVLQIAWVWFKHRKVDAMQWLSLLIIGV
FGGATLIFHNETFIKWKPTVLYWLFGVVLLGSVAFVRKNLIRAMMEQQVSLPEPMWGRLN
LVWALFFLVMGCLNLYVAYNFDTDVWVNFKLFGSMGLMVVFILAQSVWLARHMQERPANA
ANDANIGDDR